Index A | C | D | E | F | G | H | I | L | M | N | O | P | R | S | T | U A AnalysisObj (class in drive.factory.factory), [1] analyze() (drive.factory.factory.AnalysisObj method), [1] C carriers (drive.models.data_container.Data attribute), [1] (drive.models.data_container.Data_Interface attribute), [1] chr (drive.models.types.Genes attribute), [1] chr_indx (drive.models.generate_indices.Germline attribute), [1] (drive.models.generate_indices.HapIBD attribute), [1] (drive.models.generate_indices.iLASH attribute), [1] (drive.models.generate_indices.Rapid attribute), [1] clst_id (drive.models.networks.Network attribute), [1] (drive.models.networks.Network_Interface attribute), [1] cM_indx (drive.models.generate_indices.Germline attribute), [1] (drive.models.generate_indices.HapIBD attribute), [1] (drive.models.generate_indices.iLASH attribute), [1] (drive.models.generate_indices.Rapid attribute), [1] create() (in module drive.factory.factory), [1] create_indices() (in module drive.models.generate_indices), [1] D Data (class in drive.models.data_container), [1] Data_Interface (class in drive.models.data_container), [1] drive module drive.factory module drive.factory.factory module, [1] drive.factory.loader module, [1] drive.models module drive.models.data_container module, [1] drive.models.generate_indices module, [1] drive.models.networks module, [1] drive.models.types module, [1] drive.plugins module E end (drive.models.types.Genes attribute), [1] end_indx (drive.models.generate_indices.Germline attribute), [1] (drive.models.generate_indices.HapIBD attribute), [1] (drive.models.generate_indices.iLASH attribute), [1] (drive.models.generate_indices.Rapid attribute), [1] F false_negative_count (drive.models.networks.Network attribute), [1] (drive.models.networks.Network_Interface attribute), [1] false_negative_edges (drive.models.networks.Network attribute), [1] (drive.models.networks.Network_Interface attribute), [1] FileIndices (class in drive.models.generate_indices), [1] Filter (class in drive.models.types), [1] G Genes (class in drive.models.types), [1] Germline (class in drive.models.generate_indices), [1] get_haplotype_id() (drive.models.generate_indices.FileIndices method), [1] (drive.models.generate_indices.Germline method), [1] (drive.models.generate_indices.HapIBD method), [1] (drive.models.generate_indices.iLASH method), [1] (drive.models.generate_indices.Rapid method), [1] H hap1_indx (drive.models.generate_indices.Germline attribute), [1] (drive.models.generate_indices.HapIBD attribute), [1] (drive.models.generate_indices.iLASH attribute), [1] (drive.models.generate_indices.Rapid attribute), [1] hap2_indx (drive.models.generate_indices.Germline attribute), [1] (drive.models.generate_indices.HapIBD attribute), [1] (drive.models.generate_indices.iLASH attribute), [1] (drive.models.generate_indices.Rapid attribute), [1] HapIBD (class in drive.models.generate_indices), [1] haplotypes (drive.models.networks.Network attribute), [1] (drive.models.networks.Network_Interface attribute), [1] I ibd_pd (drive.models.types.Filter attribute), [1] ibd_vs (drive.models.types.Filter attribute), [1] id1_indx (drive.models.generate_indices.Germline attribute), [1] (drive.models.generate_indices.HapIBD attribute), [1] (drive.models.generate_indices.iLASH attribute), [1] (drive.models.generate_indices.Rapid attribute), [1] id2_indx (drive.models.generate_indices.Germline attribute), [1] (drive.models.generate_indices.HapIBD attribute), [1] (drive.models.generate_indices.iLASH attribute), [1] (drive.models.generate_indices.Rapid attribute), [1] iLASH (class in drive.models.generate_indices), [1] import_module() (in module drive.factory.loader), [1] initialize() (drive.factory.loader.PluginInterface static method), [1] L load_plugins() (in module drive.factory.loader), [1] M members (drive.models.networks.Network attribute), [1] (drive.models.networks.Network_Interface attribute), [1] min_pvalue_str (drive.models.networks.Network attribute), [1] (drive.models.networks.Network_Interface attribute), [1] module drive drive.factory drive.factory.factory, [1] drive.factory.loader, [1] drive.models drive.models.data_container, [1] drive.models.generate_indices, [1] drive.models.networks, [1] drive.models.types, [1] drive.plugins N Network (class in drive.models.networks), [1] Network_Interface (class in drive.models.networks), [1] networks (drive.models.data_container.Data attribute), [1] (drive.models.data_container.Data_Interface attribute), [1] O output_path (drive.models.data_container.Data attribute), [1] (drive.models.data_container.Data_Interface attribute), [1] P phenotype_descriptions (drive.models.data_container.Data attribute), [1] (drive.models.data_container.Data_Interface attribute), [1] PluginInterface (class in drive.factory.loader), [1] PluginNotFound, [1] print_members_list() (drive.models.networks.Network method), [1] (drive.models.networks.Network_Interface method), [1] pvalues (drive.models.networks.Network attribute), [1] (drive.models.networks.Network_Interface attribute), [1] R Rapid (class in drive.models.generate_indices), [1] register() (in module drive.factory.factory), [1] S start (drive.models.types.Genes attribute), [1] str_indx (drive.models.generate_indices.Germline attribute), [1] (drive.models.generate_indices.HapIBD attribute), [1] (drive.models.generate_indices.iLASH attribute), [1] (drive.models.generate_indices.Rapid attribute), [1] T true_positive_count (drive.models.networks.Network attribute), [1] (drive.models.networks.Network_Interface attribute), [1] true_positive_percent (drive.models.networks.Network attribute), [1] (drive.models.networks.Network_Interface attribute), [1] U unit (drive.models.generate_indices.Germline attribute), [1] unregister() (in module drive.factory.factory), [1]