drive package

Subpackages

• drive.cluster package
  • Submodules
  • drive.cluster.cluster module
  • Module contents
• drive.factory package
  • Submodules
  • drive.factory.factory module
    • AnalysisObj
      • AnalysisObj.analyze()
    • PluginNotFound
    • create()
    • register()
    • unregister()
  • drive.factory.loader module
    • PluginInterface
      • PluginInterface.initialize()
    • import_module()
    • load_plugins()
  • Module contents
• drive.filters package
  • Submodules
  • drive.filters.filter module
  • Module contents
• drive.models package
  • Submodules
  • drive.models.data_container module
    • Data
      • Data.carriers
      • Data.networks
      • Data.output_path
      • Data.phenotype_descriptions
    • Data_Interface
      • Data_Interface.carriers
      • Data_Interface.networks
      • Data_Interface.output_path
      • Data_Interface.phenotype_descriptions
  • drive.models.generate_indices module
    • FileIndices
      • FileIndices.get_haplotype_id()
    • Germline
      • Germline.cM_indx
      • Germline.chr_indx
      • Germline.end_indx
      • Germline.get_haplotype_id()
      • Germline.hap1_indx
      • Germline.hap2_indx
      • Germline.id1_indx
      • Germline.id2_indx
      • Germline.str_indx
      • Germline.unit
    • HapIBD
      • HapIBD.cM_indx
      • HapIBD.chr_indx
      • HapIBD.end_indx
      • HapIBD.get_haplotype_id()
      • HapIBD.hap1_indx
      • HapIBD.hap2_indx
      • HapIBD.id1_indx
      • HapIBD.id2_indx
      • HapIBD.str_indx
    • Rapid
      • Rapid.cM_indx
      • Rapid.chr_indx
      • Rapid.end_indx
      • Rapid.get_haplotype_id()
      • Rapid.hap1_indx
      • Rapid.hap2_indx
      • Rapid.id1_indx
      • Rapid.id2_indx
      • Rapid.str_indx
    • create_indices()
    • iLASH
      • iLASH.cM_indx
      • iLASH.chr_indx
      • iLASH.end_indx
      • iLASH.get_haplotype_id()
      • iLASH.hap1_indx
      • iLASH.hap2_indx
      • iLASH.id1_indx
      • iLASH.id2_indx
      • iLASH.str_indx
  • drive.models.networks module
    • Network
      • Network.clst_id
      • Network.false_negative_count
      • Network.false_negative_edges
      • Network.haplotypes
      • Network.members
      • Network.min_pvalue_str
      • Network.print_members_list()
      • Network.pvalues
      • Network.true_positive_count
      • Network.true_positive_percent
    • Network_Interface
      • Network_Interface.clst_id
      • Network_Interface.false_negative_count
      • Network_Interface.false_negative_edges
      • Network_Interface.haplotypes
      • Network_Interface.members
      • Network_Interface.min_pvalue_str
      • Network_Interface.print_members_list()
      • Network_Interface.pvalues
      • Network_Interface.true_positive_count
      • Network_Interface.true_positive_percent
  • drive.models.types module
    • Filter
      • Filter.ibd_pd
      • Filter.ibd_vs
    • Genes
      • Genes.chr
      • Genes.end
      • Genes.start
  • Module contents
• drive.plugins package
  • Submodules
  • drive.plugins.network_writer module
  • drive.plugins.pvalues module
  • Module contents

Submodules

drive.drive module

Module contents